Characterizing PROTAC ternary complex formation with mass photometry
The PROTAC technology
How to measure PROTAC ternary complex formation?
When applied to PROTAC assays, mass photometry – a label-free technology – offers insights into the dynamics of ternary complex formation. With the ability to measure the mass of single biomolecules in solution, it enables the characterization of PROTAC-driven interactions with the target protein and the E3 ligase. This means that you can use mass photometry to assess a range of behaviors that are important for the PROTAC mechanistic function: ternary complex formation, cooperativity, stoichiometry and ‘hook effect’.
Biophysical characterization of the PROTAC ‘hook effect’
Mathematical models predict a bell-shaped dependency on PROTAC concentration. At high concentrations, ineffective binary complexes are observed, which compete with effective ternary complexes. Competition leads to a decline in the formation of ternary complexes, ultimately impacting the potency of the PROTACs. This is known as the ‘hook effect’. Mass photometry can be used to quantify relative concentrations of intermediate species and assess their cooperativity effects. More specifically, you can determine the concentration range where maximal complex formation occurs and identify PROTAC compounds with significant positive cooperativity in the ternary complex, which do not present an observable ‘hook effect’.
To learn how mass photometry can help characterize protein interactions and complexes
Mass photometry for the study of PROTAC ternary complexes
More Application Notes
Browse through our catalogue of application notes highlighting some recent case studies featuring mass photometry.